Notebooks to recreate figures

Prerequisite

To run the notebooks make sure you are using the aidhs_env environment

Figure 1

AID-HS overview figure, composite of:

Hippocampal segmentations and surfaces using plot_hippunfold_toolbox.ipynb
Characterisation of HS with normative curve from analysis_normative_curves.ipynb
Characterisation of asymmetries from analysis_asymmetries_patients.ipynb
Outputs from individualised reports created with AID-HS pipeline

Figure 2

Characterisation of morphological abnormalities in HS:

normative curves from analysis_normative_curves.ipynb
analysis of asymmetries from analysis_asymmetries_patients.ipynb

Figure 3

Examples of AID-HS reports created with AID-HS pipeline

Supplementary Figure 1

Healthy hippocampal anatomy

analysis_controls.ipynb
analysis_normative_curves.ipynb
analysis_intracranialvolume.ipynb

Table 1

Demographic and clinical information for the cohort

analysis_cohort_demographics.ipynb

Table 2

AID-HS classifier performance for the detection and lateralisation of HS

analysis_train_and_evaluate.ipynb

Table 3

Comparison of detection and lateralisation performances across models

analysis_train_and_evaluate.ipynb